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1 Department of Basic Pathology, Federal University of Paraná,
Curitiba, PR, Brazil
2 UNESP Department of Biochemistry and Microbiology, Institute of
Biosciences, Rio Claro, SP, Brazil
3 Zoology Department, Federal University of Paraná, Curitiba, PR,
Brazil
4 Clinical Hospital, Federal University of Paraná, Curitiba, PR,
Brazil
5 Biochemistry Department, Federal University of Paraná, Curitiba,
PR, Brazil
6 CBS Fungal Biodiversity Centre, P.O. Box 85167, NL-3508 AD Utrecht, The
Netherlands and Institute for Biodiversity and Ecosystem Dynamics, University
of Amsterdam, Amsterdam the Netherlands
7 Department of Dermatology, Fujian Medical University Affiliated Union
Hospital, Fuzhou, P.R. China
8 "Luiz de Queiroz" Superior College of Agriculture, University
of São Paulo, Piracicaba SP, Brazil
*
Correspondence: G.S. de Hoog,
de.hoog{at}cbs.knaw.nl
| Abstract |
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Keywords Black yeasts / Chaetothyriales / chromoblastomycosis / enrichment / environmental isolation / opportunists / phaeohyphomycosis / virulence
| INTRODUCTION |
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Among the diseases caused by chaetothyrialean fungi (teleomorph family Herpotrichiellaceae), chromoblastomycosis and other traumatic skin disorders are the most frequent (Attili et al. 1998, Zeng et al. 2007). Although the agents are supposed to originate from the environment, their isolation from nature is difficult. This is probably due to their oligotrophic nature, low competitive ability, and in general insufficient data on their natural habitat. Several selective techniques have been developed enabling recovery of these fungi (de Hoog et al. 2005; Dixon et al. 1980, Prenafeta-Boldú et al. 2006, Satow et al. 2008, Zhao et al. 2008, Sudhadham et al. 2008). These investigations indicated that opportunism of these fungi must be explained from the perspective of unexpected environments such as rock, creosote-treated wood, hydrocarbon-polluted soil, and hyperparasitism of fungi and lichens (Sterflinger et al. 1999, Wang & Zabel 1997, Lutzoni et al. 2001).
In the present study we tried to find recover chaetothyrialean fungi from the natural environment in the State of Paraná, Southern Brazil, where chromoblastomycosis and phaeohyphomycosis are frequent in endemic areas. In addition, human-made substrates like creosote-treated wood and hydrocarbon-polluted soil were sampled. Strains morphologically similar to etiological agents of chromoblastomycosis, such as Fonsecaea pedrosoi and Phialophora verrucosa, and to agents of subcutaneous and systemic infections, such as Exophiala jeanselmei and Cladophialophora bantiana, were selected. The aim of this investigation was to clarify whether these fungi were identical to known etiologic agents of disease. Isolates were compared with clinical reference strains on the basis morphological, physiological and molecular parameters.
| MATERIALS AND METHODS |
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Morphology
Preliminary identification was carried out based on macro- and microscopic
features of the colonies after slide culturing on Sabouraud's dextrose agar at
room temperature (de Hoog et al.
2000a). In addition, vacuum-dried samples were mounted on carbon
tape and sputtered with gold for 180 s for SEM. Observations were done in a
Zeiss DSM 940 A microscope, operated at 5 kV.
Nutritional physiology
Some isolates with cultural and morphological similarity to known agents of
disease were selected for physiological testing. Growth and fermentative
abilities were tested in duplicate, negative controls were added. The fungi
were incubated at 28 and 36 °C on the following culture media: Mycosel,
Potato Dextrose Agar (PDA), Minimal Medium (MM), Complete Medium (CM), and
Malt Extract Agar (MEA). Assimilation and fermentation tests were carried out
in liquid medium according to de Hoog et al.
(1995,1995).
Halotolerance was tested in a liquid medium at 2.5, 5 and 10 % (w/v) NaCl and
MgCl2. Cycloheximide tolerance was determined in liquid medium at
0.01, 0.05 and 0.1 % (w/v).
DNA extraction
About 1 cm2 mycelium of 20 to 30-d-old cultures was transferred
to a 2 mL Eppendorf tube containing 300 µL CTAB (cetyltrimethylammonium
bromide) buffer [CTAB 2% (w/v), NaCl 1.4 M, Tris-HCl 100 mM, pH 8.0; EDTA 20
mM, b-mercaptoethanol 0.2 % (v/v)] and about 80 mg of a silica mixture (silica
gel H, Merck 7736, Darmstadt, Germany / Kieselguhr Celite 545, Machery,
Düren, Germany, 2:1, w/w). Cells were disrupted manually with a sterile
pestle for approximately 5 min. Subsequently 200 µL CTAB buffer was added,
the mixture was vortexed and incubated for 10 min at 65 °C. After addition
of 500 µL chloroform, the solution was mixed and centrifuged for 5 min at
20 500 g and the supernatant transferred to a new tube with 2 vols of ice cold
96 % ethanol. DNA was allowed to precipitate for 30 min at –20°C and
then centrifuged again for 5 min at 20 500 g. Subsequently the pellet was
washed with cold 70 % ethanol. After drying at room temperature it was
resuspended in 97.5 µL TE-buffer plus 2.5 µL RNAse 20
U.mL–1 and incubated for 5 min at 37 °C, before storage
at –20 °C (Gerrits van den Ende
& de Hoog 1999).
Sequencing
rDNA Internal Transcribed Spacer (ITS) was amplified using primers V9G and
LS266 (Gerrits van den Ende & de Hoog
1999) and sequenced with ITS1 and ITS4
(White et al. 1990).
Amplicons were cleaned with GFX PCR DNA purification kit (GE Healthcare,
U.K.). Sequencing was performed on an ABI 3730XL automatic sequencer.
Sequences were edited using the Seqman package (DNAStar, Madison, U.S.A.) and
aligned using BioNumerics v.4.61 (Applied Maths, Kortrijk, Belgium). Sequences
were compared in a research data database of black fungi maintained at CBS,
validated by ex-type strains of all known species.
| RESULTS |
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Isolate FE9 was morphologically very similar to Cladophialophora bantiana. Physiological testing demonstrated ability to assimilate ethanol, lactose and citrate, but it was unable to grow at 40 °C (Table 2). Sequence data proved identity to C. immunda (Table 1). Strain F10PLB was physiologically similar to FE9 of C. immunda (Table 2), which was confirmed by molecular data (Table 1). F10PLA showed physiological characteristics close to the FE9, differing only by growth in the presence of creatine and creatinine (Table 2); also this strain was identified by ITS sequence data as C. immunda. The isolate FP4IIB was capable of growing with 0.1 % cycloheximide, showed reduced growth in the presence of ethanol and had a maximum growth temperature of 37 °C (Table 2). It presented ellipsoidal to fusiform conidia originating from denticles, consistent with Cladophialophora devriesii. However, molecular data identified the strain as C. saturnica (Table 1). FP4IIA, phenetically identified as Cladophialophora sp. and physiologically similar to FP4IIB was identified as C. saturnica by ITS sequencing (Table 1). FE1IIA and F11PLA had fusiform conidia in chains. FE1IIA was unable to assimilate galacticol, developed poorly in the presence of D-glucoronate, but was able to grow in a medium with ethanol; F11PLA assimilated glucoronate having a weak development in the presence of ethanol (Table 2). With ITS sequencing two undescribed Cladophialophora species appeared to be concerned (Table 1).
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Strain FE5P4 was isolated from decaying cambara wood
(Fig. 2B) in an area of native
species (Fig. 2A) dominated by
cambara trees (Gochnathia polymorpha) and stem palm (Syagrus
romanzoffiana) near Colombo city (Fig.
1). This isolate was morphologically identified as Fonsecaea
pedrosoi. Physiologically it differed from F. pedrosoi by
assimilation of L-sorbose, melibiose, ribitol, xylitol, myo-inositol,
glucono-
-lactone, D- and L-lactate, succinate, nitrite, urease and
tolerance to 5% NaCl (Table 2).
This physiological profile was similar to that of clinical strains FP65 and
FP82 (Table 2) originating from
symptomatic patients of the same geographic region (first plateau,
Fig. 1). With ITS sequencing
FE5P4 was identified as Fonsecaea monophora. Environmental isolate
FP8D morphologically was cladophialophora-like but was identified as F.
monophora based on molecular data. It had physiological similarity with
clinical strain FP82 of F. monophora
(Table 2) and was isolated from
the same location where the patient, a carrier of chromoblastomycosis, had
acquired his infection (Piraquara city,
Fig. 1). All strains grew at 37
°C but not at 40 °C, similar to known Fonsecaea species
(de Hoog et al.
2004). Isolate F1PLE was recovered from soil, located on the
second plateau (Fig. 1). It
showed similar morphology to Rhinocladiella but through molecular
data it was identified as F. monophora
(Table 1). Strains FE5P6, FE5II
and FCL2 strains appeared to represent undescribed species of the genus
Fonsecaea (Table
1).
In the same region isolate (FE3) was recovered which was morphologically identified as Phialophora verrucosa on the basis of pronounced funnel-shaped collarettes from which the conidia were released. The isolate did not assimilate glucose, ribose and inulin but was capable of L-lysine assimilation (Table 2), a result that is consistent with the physiological characteristics of the P. verrucosa reference strain (de Hoog et al. 1999). With molecular ID a hitherto undescribed Phialophora species was found (Table 1).
Strain FE6IIB, morphologically identified as Exophiala species (Table 1) physiologically differed from reference strains of Exophiala (de Hoog et al. 2000a) by positive responses to lactose, L-arabinose, myo-inositol, D-gluconate and DL-lactate, by being able to assimilate D-ribose, and also presenting weak assimilation of glucoronate. By molecular identification was identified as the anamorph of Capronia semi-immersa. Isolate F14PL was preponderantly yeast-like and was provisionally identified as Exophiala jeanselmei, but ITS sequence data suggested E. bergeri (Table 1). Isolate FE4IIB showed morphological similarity to E. lecanii-corni, but differed from reference strains (de Hoog et al. 2000a) by positive assimilation of lactose, L-arabinose, myo-inositol, D-glucuronate and DL-lactate and by being able to assimilate D-ribose and D-glucoronate. Molecular data suggested identity with E. xenobiotica.
Isolates F20PR3 and F3PLC, morphologically having the appearance of Rhinocladiella species were identified as Exophiala xenobiotica by ITS data. These strains were unable to ferment glucose, to assimilate methanol, to grow at 40 °C and were citrate negative. None of the strains analysed produced extracellular DNAse. Rhinocladiella-like strains F9PR and F9PRC were physiologically similar, differing only in assimilation of glycerol and L-lysine (Table 2). Using molecular data, they were identified as an undescribed Rhinocladiella species (Table 1). Strains FE10IIB and FE10IIB1 were initially thought to be Rhinocladiella- or fonsecaea-like species. FE10IIB1 did not assimilate inulin and was physiologically similar to Rhinocladiella atrovirens (CBS 264.49 and CBS 380.59). No close molecular match was found for either of these strains (Table 1).
| DISCUSSION |
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The state of Paraná in southern Brazil is an endemic region for chromoblastomycosis. Fonsecaea pedrosoi is supposed to be responsible for more than 95% of the clinical cases, mainly infecting agricultural laborers (Queiroz-Telles 1997). This species is now known to comprise two cryptic entities, causing the same disease but seemingly differing in virulence (de Hoog et al. 2004). Out of five clinical strains tested from Paraná, two appeared to be F. monophora (Table 1). Our extensive environmental sampling in 56 locations in the state of Paraná showed that Fonsecaea pedrosoi was not isolated from nature, but instead we repeatedly encountered F. monophora. The natural source and route of infection of F. pedrosoi therefore still remains a mystery.
Several chaetothyrialean opportunists were isolated which are known to be associated with mild disorders, such as the cutaneous species Cladophialophora saturnica (Badali et al. 2008) and Exophiala xenobiotica (de Hoog et al. 2006). None of the systemic pathogens, such as Cladophialophora bantiana, were found. Several species listed in Table 1 concern hitherto undescribed, apparently saprobic representatives of the order Chaetothyriales that have never been reported as agents of human or animal disorders. The discrepancy of molecular identification and morphological and physiological results that were validated by analysis of ex-type strains of chaetothyrialean fungi (de Hoog et al. 1995,1995) indicated that a vast number of saprobic species still awaits discovery and description.
The hydrocarbon-polluted environments yielded another spectrum of chaetothyrialean fungi. Exophiala dermatitidis is a fairly common opportunist, occasionally causing fatal, systemic disease. Exophiala bergeri, E. xenobiotica, E. angulospora and Veronaea botryosa are exceptional and/or low-virulent opportunists. Exophiala bergeri has thus far rarely been reported as an agent of disease, but was abundantly isolated when monoaromatic hydrocarbons were used for enrichment. The presence of aromatic compounds in the sample increases colony density and diversity of black yeasts. The ecological and physiological patterns of species concerned suggests an evolutionary connection between the ability to develop on alkylbenzenes and the ability to cause diseases in humans and animals (Prenafeta-Boldú et al. 2006).
The present study was an attempt to verify whether infections caused by Fonsecaea pedrosoi and other agents of human mycosis are likely to be initiated by traumatic inoculation of environmental strains, and, more in general, to find the source of infection of invasive black yeasts-like fungi. Our results showed that this link is complex: environmental strains cannot always be linked directly to clinical cases. This is illustrated above by the genus Fonsecaea, known from two clinically relevant species. Mostly F. monophora or unknown Fonsecaea species were isolated. The apparently more virulent species F. pedrosoi is likely to require special, hitherto unknown parameters for isolation, such as the use of an animal bait (Dixon et al. 1980, Gezuele et al. 1972). Thus far it only has been encountered on the human patient, always causing chromoblastomycosis when the host is immunocompetent. In contrast, F. monophora can be isolated from the environment without an animal bait, and is a less specific opportunist (Surash et al. 2006). In general, pathogenicity and virulence of chaetothyrialean black yeasts may differ between closely related species. The group can be divided in three ecological groups, as follows. (1) Saprobes not known from vertebrate disorders, such as the majority of undescribed strains reported in Table 1; (2) Low-virulent opportunists that can directly be isolated from the environment, such as F. monophora, and (3) Highly specific pathogens that cannot be isolated from the environment directly but require a living mammal bait, resp. a human host. This suggests that isolation efficiencies differing between species reflect different pathogenic tendencies in pathogenic adaptation of the species.
| Acknowledgments |
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