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1 Centraalbureau voor Schimmelcultures, Fungal Biodiversity Centre, P.O. Box
85167, 3508 AD, Utrecht, The Netherlands
2 CIRAD-FLHOR, Station de Neufchâteau, 97130 Capesterre Belle Eau,
Guadeloupe, French West Indies
3 UMR PaVé N°77-Faculté des Sciences, Université
d'Angers 2, Bd Lavoisier 49045 Angers cedex, France
4 Centre for Research in Fungal Diversity, Department of Ecology &
Biodiversity, The University of Hong Kong, Pokfulam Road, Hong Kong, SAR
China
*
Correspondence: Pedro W. Crous,
crous{at}cbs.knaw.nl
| Abstract |
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Taxonomic novelties: Cylindrocladium australiense Crous & K.D. Hyde sp. nov., Cylindrocladium ecuadoriae Crous & M.J. Wingf. sp. nov., Curvicladiella Decock & Crous nom. nov., Curvicladiella cignea (Decock & Crous) Decock & Crous comb. nov.
Keywords Ascomycetes / Calonectria / Cylindrocladium / Hypocreales / leaf spots / soil fungi / systematics
| INTRODUCTION |
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Cylindrocladium species with clavate vesicles are well-known pathogens from a wide range of hosts in most subtropical to tropical countries (Crous & Wingfield 1992, Crous et al. 1995, 1997, 1999, 2000, Kang et al. 2001, Crous 2002). In the current study, we obtained numerous isolates of Cylindrocladium from baited soils collected in tropical areas. Further Cylindrocladium isolates were obtained from a biotic complex including root rot fungi and plant-parasitic nematodes associated with toppling disease of banana (Risède & Simoneau 2001). Previous studies have shown that isolates resembling Cy. gracile (Bugn.) Boesew. were pathogenic to banana, and associated with stem lesions, root breakage and toppling disease (Risède & Simoneau 2001, 2004). The aim of the present study was to analyze all available Cylindrocladium strains with clavate vesicles using morphology and DNA sequence analysis of their β-tubulin and histone H3 gene regions in order to resolve the status of Cylindrocladium species with clavate vesicles. A further aim was to identify the Cylindrocladium sp. associated with toppling disease of banana.
| MATERIALS AND METHODS |
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DNA phylogeny
Genomic DNA was isolated from fungal mycelia collected from the plates
using the isolation protocol of Lee & Taylor
(1990). Two loci were
amplified and sequenced as explained in Crous et al.
(2004), namely, part of the
β-tubulin gene, amplified with primers T1
(O'Donnell & Cigelnik
1997) and CYLTUB1R (Crous
et al. 2004); and part of the histone H3 gene using
primers CYLH3F and CYLH3R (Crous et
al. 2004).
The sequences generated in this study were added to other sequences obtained from GenBank (http://www.ncbi.nlm.nih.gov) and TreeBASE (http://www.treebase.org) and the alignment was assembled using Sequence Alignment Editor v. 2.0a11 (Rambaut 2002) with manual adjustments for improvement made visually where necessary. Sequences for Cylindrocladiella peruviana (Bat., J.L. Bezerra & M.M.P. Herrera) Boesew. and Cylindrocladiella lageniformis Crous, M.J. Wingf. & Alfenas were added to the alignments as outgroups.
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Taxonomy
Morphological examinations were made from cultures sporulating on CLA.
Structures were mounted in lactic acid, and 30 measurements at x 1000
magnification were made of each structure. The 95 % confidence levels were
determined, and the extremes of spore measurements given in parentheses.
Colony reverse colours were noted after 6 d on MEA at 25 °C in the dark,
using the colour charts of Rayner
(1970) for comparison. All
cultures studied are maintained in the culture collection of the
Centraalbureau voor Schimmelcultures (CBS), Utrecht, the Netherlands
(Table 1).
| RESULTS |
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Approximately 480 bases of the histone gene were determined for the isolates in Table 1. The manually adjusted alignment contained 115 isolates (including the two outgroups), and for each taxon 425 characters including alignment gaps were analysed. Of these characters, 168 were parsimony-informative, 9 were variable and parsimony-uninformative, and 248 were constant. Neighbour-joining analysis using the three substitution models, as well as parsimony analysis, yielded trees in which the same clades were supported. For distance analysis, the Jukes-Cantor and HKY85 substitution models yielded trees with identical topologies, but the tree obtained from the uncorrected "p" model had rearrangements at the deep nodes when compared with the other two trees (data not shown). Parsimony analysis of the alignment yielded four most parsimonious trees (TL = 917 steps; CI = 0.382; RI = 0.868; RC = 0.331), one of which is shown in Fig. 2. All of these trees resulted from reordering of taxa within the Cy. colhounii clade. As with the β-tubulin tree, taxa from the same species clustered together in well-supported clades (Fig. 2). Clade order was not supported at the deeper nodes.
Taxonomy
Calonectria clavata Alfieri, El-Gholl & E.L. Barnard,
Mycotaxon 48: 206. 1993.
Anamorph: Cylindrocladium flexuosum Crous, Syst. Appl. Microbiol.18: 248. 1995.
Macroconidiophores consisting of a stipe, a penicillate arrangement of fertile branches, a stipe extension, and a terminal vesicle; stipe septate, pale brown at base, hyaline, smooth, septate, 60–260 x 5–7 µm; stipe extensions septate, straight to flexuous, 120–450 µm long, 3–4 µm wide at apical septum, terminating in a narrowly clavate vesicle, 4–5 µm diam. Conidiogenous apparatus 70–120 µm long, 25–60 µm wide; primary branches aseptate or 1-septate, 30–65 x 4–6 µm; secondary branches aseptate or 1-septate, 30–50 x 3–6 µm, tertiary and quaternary branches aseptate, 15–30 x 3–5 µm, each terminal branch producing 1–4 phialides; phialides elongate doliiform to reniform, hyaline, aseptate, 10–20 x 4–5 µm, apex with minute periclinal thickening and inconspicuous collarette. Conidia cylindrical, rounded at both ends, straight, (55–)68–75(–95) x (5–)6(–7) µm (av. = 70 x 6 µm), 1-septate (but up to 5-septate at germination), lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime (description based on isolates obtained from Musa).
Specimens examined: U.S.A. Florida, Lake Placid, roots and stems of Callistemon viminalis, 5 Apr. 1978, C.P. Seymour & E.L. Barnard, PREM 51721 holotype of Cy. flexuosum, P078-1543 = ATCC 66389 = STE-U 2536 = CBS 114557culture ex-type, heterothallic mating with P078-1261 = STE-U 2537 = CBS 114666, Florida, Lee County, root debris in non-sterilized peat, 4 Mar. 1978, D. Ferrin, Aug. 1989, N.E. El-Gholl, FLAS F55430, holotype of Ca. clavata. Guadeloupe, Musa sp., J.M. Risède & Ph. Simoneau, Gua12 = CPC 11351, CPC 11352 = CBS 119338, Gua9 = CBS 112676. Martinique, Musa sp., J.M. Risède & Ph. Simoneau, Mar11 = CPC 11349 = CBS 119336, Mar23 = CPC 11348 = CBS 119335, Mar8 = CPC 11347 = CBS 119334. Saint Lucia, Musa sp., SLU2 = CBS 112675, SLU5 = CPC 11350 = CBS 119337.
Cultural characteristics: See Crous (2002).
Substrates and distribution: Musa spp., Guadeloupe, Martinique, Saint Lucia; Callistemon viminalis, and root debris in peat U.S.A. (Florida) (Crous 2002).
Notes: Cylindrocladium flexuosum is known to have conidia that are straight to curved, (44–)50–70(–80) x (4–)5–6 µm (av. = 65 x 5 µm) and 1(–3)-septate. The isolates obtained from Musa differ from the ex-type strains by having conidia that are up to 7 µm wide. Although we originally suspected the Musa isolates to represent an undescribed taxon, they clustered in the same clade as those of Cy. flexuosum. None of the isolates were able to mate, and since its original description, it has not proven possible to reproduce perithecia of Calonectria clavata in culture.
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Cylindrocladio colhounii simile sed conidiis latioribus, (48–)57–68(–75) x (6–)6.5(–7) µm, distinguendum.
Teleomorph unknown. Conidiophores consisting of a stipe bearing a penicillate arrangement of fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 60–150 x 6–7 µm; stipe extensions septate, straight to flexuous, 300–450 µm long, 2.5–3 µm wide at the apical septum, terminating in a clavate vesicle, (3.5–)5(–6) µm diam. Conidiogenous apparatus 40–80 µm long, and 40–60 µm wide; primary branches aseptate or 1-septate, 15–30 x 5–7 µm; secondary branches aseptate, 12–20 x 5–6 µm, tertiary and additional branches (–6), aseptate, 10–15 x 5–6 µm, each terminal branch producing 1–4 phialides; phialides cylindrical to allantoid, hyaline, aseptate, 10–15 x 3.5–4.5 µm; apex with minute periclinal thickening and inconspicuous collarette. Conidia cylindrical, rounded at both ends, straight, (48–)57–68(–75) x (6–)6.5(–7) µm (av. = 63 x 6.5 µm), (1–)3-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Megaconidia and microconidia unknown.
Specimen examined: Australia, Queensland, Topaz, Atherton Tablelands, Ficus pleurocarpa, 2 Apr. 2001, C. Pearce & B. Paulus, holotype CBS H-17872, culture ex-type CBS 112954 = CPC 4714.
Cultural characteristics: Colonies fast growing with abundant white aerial mycelium; surface and reverse sienna (13i), with moderate numbers of chlamydospores.
Substrate: Ficus pleurocarpa.
Distribution: Australia.
Notes: This species can be confused with taxa in the Cylindrocladium colhounii Peerally species complex that form 3-septate conidia of similar dimensions, and yellow Calonectria perithecia. It can be distinguished by having wider conidia (48–)57–68(–75) x (6–)6.5(–7) µm than Cy. colhounii [(45–)60–70(–80) x (4–)5(–6) µm], and Cy. madagascariense Crous [(42–)52–58(–65) x (3.5–)4–5 µm]. Another species that needs to be compared to Cy. australiense is Cy. theae (Petch) Subram., which again has larger conidia (65–)70–88(–96) x 5–6(–7) µm, and also forms megaconidia and a Calonectria teleomorph with red perithecia in culture (Crous 2002).
Cylindrocladium ecuadoriae Crous & M.J. Wingf., sp. nov. MycoBank MB500865. Figs 5, 6.
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Cylindrocladio gracili simile, sed conidiis angustioribus, (45–)48–55(–65) x (4–)4.5(–5) µm, distinguendum.
Teleomorph unknown. Conidiophores consisting of a stipe bearing a penicillate arrangement of fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, 60–100 x 5–7 µm; stipe extensions septate, straight to flexuous, 200–300 µm long, 2–3 µm wide at the apical septum, terminating in a clavate vesicle, (3–)4(–5) µm diam. Conidiogenous apparatus 30–100 µm long and wide; primary branches aseptate or 1-septate, 20–30 x 3–5 µm; secondary branches aseptate, 15–25 x 3–5 µm, tertiary branches aseptate, 12–17 x 3–5 µm, additional branches (–7), aseptate, 10–15 x 3–5 µm, each terminal branch producing 2–6 phialides; phialides doliiform to reniform, hyaline, aseptate, 7–15 x 3–4 µm; apex with minute periclinal thickening and inconspicuous collarette. Conidia cylindrical, rounded at both ends, straight, (45–)48–55(–65) x (4–)4.5(–5) µm (av. = 51 x 4.5 µm), 1(–3)-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Megaconidia and microconidia unknown.
Specimens examined: Ecuador, soil, 20 Jun. 1997, M.J. Wingfield, holotype CBS H-17871, culture ex-type CBS 111406 = CPC 1635; CBS 111394 = CPC 1628; CBS 111412 = CPC 1648; CBS 111393 = CPC 1627; CBS 111425 = CPC 1657. Brazil, Belém, Cpatu, soil, 1996, P.W. Crous, CBS 111383 = CPC 1587.
Cultural characteristics: Colonies sienna on the surface, and umber in reverse; chlamydospores extensive, dense, occurring throughout the medium, forming microsclerotia, with moderate to extensive sporulation on the aerial mycelium.
Substrate: Soil.
Distribution: ?Brazil, Ecuador.
Notes: When first isolated, isolates of Cy. ecuadoriae were observed to also form a few conidia that were 3-septate when studied on CLA. Presently, however, strains seem to have lost this ability and only form 1-septate conidia. The same phenomenon was also observed in the strain obtained from Brazil (CBS 111383). Although the Brazilian strain clusters close to those obtained from Ecuador, its conidia are somewhat shorter (av. 44 µm) than those from Ecuador (av. 51 µm), and it might very well end up representing a cryptic species closely related to Cy. ecuadoriae.
Cylindrocladium ecuadoriae is morphologically similar to others in the Cy. gracile (Bugn.) Boesew. species complex. Its conidia are (45–)48–55(–65) x (4–)4.5(–5) µm (av. = 51 x 4.5 µm), thus longer and wider than those of Cy. graciloideum Crous & G.R.A. Mchau [(35–)40–48(–60) x 4–5(–6) µm (av. = 45 x 4.5 µm)], narrower than those of Cy. gracile [(38–)40–55(–65) x (3.5–)4–5(–6) µm (av. = 53 x 4.5 µm)], and shorter than those of Cy. flexuosum Crous [(44–)50–70(–80) x (4–)5–6 µm (av. = 65 x 5 µm)]. In the past, isolates of Cy. ecuadoriae were treated as representative of Cy. pseudogracile Crous, which has conidia of similar dimensions of [(40–)53–58(–65) x (3.5–)4–5 µm (av. = 56 x 4.5 µm)]and are 1(–3)-septate. Cylindrocladium ecuadoriae can be distinguished from Cy. pseudogacile based on its lower average conidial length, and the absence of a Calonectria state in culture (Crous 2002).
| DISCUSSION |
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The description of Cy. australiense from Australia adds yet another species to the Cy. colhounii/madagascariense/theae complex. It appears, however, that there are yet more Australian species awaiting description, as CBS 112957, isolated from Eleaeocarpus angustifolius in Queensland (Table 1), also clustered apart from any known taxon. Vesicles were clavate, and conidia 3-septate, 60–90 x 5–6 µm. We chose not to name this species, as the strain sporulated rather poorly, making it difficult to determine its range of morphological variation on CLA.
Isolates of Cylindrocladium ecuadoriae have until recently been treated under the name Cy. pseudogracile. Given the significant overlap in general conidial dimensions, this is not surprising, as these two species are rather similar, and can only be distinguished once the mean conidial dimensions have been determined. The single Brazilian isolate, CBS 11383, which again has smaller conidia than both Cy. ecuadoriae and Cy. pseudogracile, suggests that there may be yet more cryptic taxa within this complex that need to be resolved.
| APPENDIX |
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Nectria pyrochroa Desm., Pl. Crypt. France Ed. 2:
372. 1856. Anamorph: Cylindrocladiumilicicola (Hawley) Boedijn & Reitsma, Reinwardtia 1: 57. 1950. Fig. 7.
Candelospora ilicicola Hawley, Proc. Roy. Irish
Acad. 31: 11. 1912. Macroconidiophores consisting of a stipe, a penicillate arrangement of fertile branches, a stipe extension, and a terminal vesicle; stipe septate, hyaline, smooth, up to 70 µm long, 5–6 µm wide; stipe extensions septate, straight to flexuous, 160–210 µm long, 3–4 µm wide at apical septum, terminating in an obpyriform to broadly ellipsoidal vesicle, 5–8 µm diam. Conidiogenous apparatus with primary branches that are aseptate or 1-septate, 15–20 x 3–5 µm; secondary branches aseptate, 10–20 x 3–5 µm, tertiary branches aseptate, rarely observed, 8–15 x 3–5 µm, each terminal branch producing 2–4 phialides; phialides doliiform to reniform, hyaline, aseptate, 9–15 x 3–4 µm, apex with minute periclinal thickening and inconspicuous collarette. Conidia cylindrical, rounded at both ends, straight, (50–)63–68(–70) x 5(–6) µm, (1–)3-septate, lacking a visible abscission scar, held in parallel cylindrical clusters by colourless slime. Megaconidia and microconidia unknown.
Specimens examined: Ireland, Clare Island, Ilex aquifolium, Hawley, K 61269!, holotype of Cy. ilicicola, IMI 76542 isotype. Netherlands, South-East Limburg, Vijlenerbos, Vijlen, Ilex aquifolium, Aug. 1970, H.A van der Aa, epitype designated here CBS H-15110, ex-epitype culture CBS 749.70.
Cultural characteristics: Cultures sterile, white.
Substrate and distribution: See Crous (2002).
Notes: The genus Calonectria is based upon Calonectria pyrochroa (= Ca. daldiniana), which is linked to a Cylindrocladium ilicicola anamorph (Rossman 1979, Brayford & Chapman 1987, Crous 2002). All cultures thus far collected by us, and thought to be representative of Cy. ilicicola, have turned out to represent other species, and hence no authentic cultures of Cy. ilicicola have as yet been obtained. A strain not previously studied by us was recently retrieved from the CBS collection (CBS 749.70). Although the isolate sporulated poorly, it was accompanied by a very good specimen, which proved to be identical to the original holotype collection. We therefore designate this specimen as epitype, thereby obtaining an authentic strain of Cy. ilicicola for further study.
Curvicladiella Decock & Crous, nom. nov. MycoBank MB500866.
Curvicladium Decock & Crous, Mycologia 90: 276. 1998
[non Curvicladium Enroth,
1993]. Type species: Curvicladiella cignea (Decock & Crous) Decock & Crous
Curvicladiella cignea (Decock & Crous) Decock & Crous, comb. nov. MycoBank MB500867.
Curvicladium cigneum Decock & Crous, Mycologia 90:
277. 1998. Specimens examined: French Guiana, Matoury, first part of the Lamirande trail, on decaying leaf of unknown angiosperm, 23 Jan. 1997, C. Decock FG2240, MUCL 40269 = CPC 1595 = CBS 109167 (ex-type culture); on decaying seed of unknown angiosperm, 20 Jan. 1997, C. Decock FG2158, MUCL 40268 = CPC 1594 = CBS 109168.
Notes: It was recently brought to our attention (J. Bischoff, NCBI), that the generic name "Curvicladium", which was proposed by Decock & Crous (1998) for a anamorphic fungus collected from leaf litter in French Guiana, was already occupied for a species of moss (Enroth 1993). A new name is thus called for, and herewith we propose Curvicladiella Decock & Crous, to replace Curvicladium Decock & Crous (1998).
| Acknowledgments |
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| References |
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Crous PW, Kang JC, Schoch CL, Mchau GRA (1999). Phylogenetic relationships of Cylindrocladium pseudogracile and Cylindrocladium rumohrae with morphologically similar taxa, based on morphology and DNA sequences of internal transcribed spacers and β-tubulin. Canadian Journal of Botany 77:1813 –1820.
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